Curriculum
Protein Modeling and Molecular Dynamics Simulations
Module (6 Months) - PROTEIN MODELING & SIMULATION
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- Protein Data Bank (PDB), RCSB, UNIPROT
- Relationship between sequence and 3D structure of a protein
- Alignment of protein sequences for homology modeling
- Needleman-Wunsch alignment method
Preview - Multiple sequence alignments (MSA)
- Homology modeling of proteins
- Refinement of the homology model
- Model validation
- CHARM & AMBER & VMD
- Simulation using GROMACS
Video lesson