Protein Modeling and Molecular Dynamics Simulations
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Recent research papers of our students and faculty
All research →70+ peer-reviewed papers · cited 1,390+ times · across 38 journals
Pesticides Curbing Soil Fertility: Effect of Complexation of Free Metal Ions.
Occurrence and stability of lone pair-π stacking interactions between ribose and nucleobases in functional RNAs.
EXCELLENT 171 reviewsPosted on Sana Shamim Its a good platform to learn and get the indepth knowledge of the subjectPosted on Aminu Musa Bringa we really appreciate the workshop its actually very helpful and educative. Thanks alot!Posted on Sara Junaid During both days, extensive knowledge was delivered and clarify the concepts. Thank YouPosted on Ruhul Amin It was a great online free session on molecular docking and docking result analysis. Learned much more from the session. That's so kind of you STEMskills team.Posted on KHOR ZHI XIN STEMskills Lab India provides us the teaching of necessary computational tools in a very pleasant way. We had a great time to learn through the workshop.Load more
Latest from the blog
Free, hands-on guides on docking, molecular dynamics, and computational biology.
How to Parameterize a Small-Molecule Ligand for a GROMACS Simulation: CGenFF vs ACPYPE vs ATB
Learn how to build a GROMACS-ready ligand topology. Compare CGenFF, ACPYPE and ATB, then prepare a defensible protein-ligand system step by step.
Read the article →How to Choose a Force Field for Your GROMACS Simulation (CHARMM36 vs AMBER vs OPLS)
Decide which force field to pick at the GROMACS pdb2gmx step. Compare CHARMM36, AMBER and OPLS, and learn to justify your choice…
Read the article →How to Analyze RMSD and RMSF from a GROMACS MD Trajectory (Step-by-Step)
Calculate backbone RMSD and per-residue RMSF from a GROMACS trajectory with gmx rms and gmx rmsf, then read the plots. Start analyzing…
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StemSkills Lab is an education platform that offers a variety of advanced STEM courses for professionals, students, and professors. Our focused courses include bioinformatics, Protein modeling, 3D design, digital marketing, etc. Each course is designed to provide a comprehensive understanding of the topic and its applications. The bioinformatics related course covers various topics like genomics, proteomics, molecular biology, Drug Design, molecular docking, and computational biology, etc. The 3D design course covers topics like 3D modeling, animation, and rendering. The digital marketing course covers SEO, SEM, and social media marketing topics. The modeling of high energy materials course covers topics like theoretical and computational methods in high-energy modeling materials. Upon completion of each course, participants will receive a certificate recognizing their new skills. And the most successful candidates will have the opportunity to collaborate on extensive research projects and publish the research outcome. With StemSkills Lab, you can upgrade your skills in various fields, stay current in the industry, and also get a chance to work on real-world research projects from the comfort of your home.







