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How to Analyze RMSD and RMSF from a GROMACS MD Trajectory (Step-by-Step)
Calculate backbone RMSD and per-residue RMSF from a GROMACS trajectory with gmx rms and gmx rmsf, then read the plots. Start analyzing…
DA
Dr. Abdul Rajjak Shaikh
·
10 min read
June 30, 2026
Updated
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