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Molecular Modeling
How to Analyze Protein Secondary Structure from a GROMACS Trajectory (gmx dssp): A Step-by-Step Guide
Run gmx dssp on your GROMACS trajectory, read the .dat and .xvg outputs, and fix the "do_dssp not found" error that breaks…
DA
Dr. Abdul Rajjak Shaikh
·
13 min read
August 16, 2026
Updated
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