Molecular Visualization
StemSkills Lab > Molecular Visualization
How to Make Publication-Quality Figures in PyMOL: Protein-Ligand Complexes, Step by Step
17
Jul
Turn a docked pose into a figure your supervisor accepts. Real PyMOL commands for cartoon-plus-sticks, labelled H-bonds, and a 300 dpi ray-traced render.
How to Visualize a GROMACS Trajectory in VMD: A Step-by-Step Beginner’s Guide
29
Jun
Open your first GROMACS trajectory in VMD, fix the jumping-protein artifact, style a cartoon view, and export a movie. Watch your simulation move.
Tags: Computational Biology , GROMACS , Molecular Dynamics , Molecular Visualization , Trajectory Analysis , VMD ,