Tag
Molecular Visualization
Molecular Modeling PyMOL vs VMD vs ChimeraX: Which Should You Learn? Pick your molecular visualization tool by the job it does. Compare PyMOL, VMD and ChimeraX on licence, platforms and scripting before you… Dr. Abdul Rajjak Shaikh 13 min read Molecular Modeling How to Install PyMOL for Free (Open-Source PyMOL on Windows, Linux and Mac): A Step-by-Step Guide for Students Open-source PyMOL is free under a BSD-like licence. Install it with one conda command on Windows, Linux or Mac, then verify it… Dr. Abdul Rajjak Shaikh 13 min read Molecular Modeling UCSF ChimeraX Tutorial for Beginners: Load, Inspect and Clean a Protein Structure Learn UCSF ChimeraX in one sitting: fetch a PDB entry, master the 12 core commands, then clean the structure for docking or… Dr. Abdul Rajjak Shaikh 13 min read Updated Molecular Modeling How to Make Publication-Quality Figures in PyMOL: Protein-Ligand Complexes, Step by Step Turn a docked pose into a figure your supervisor accepts. Real PyMOL commands for cartoon-plus-sticks, labelled H-bonds, and a 300 dpi ray-traced… Dr. Abdul Rajjak Shaikh 13 min read Updated Molecular Modeling How to Visualize a GROMACS Trajectory in VMD: A Step-by-Step Beginner’s Guide Open your first GROMACS trajectory in VMD, fix the jumping-protein artifact, style a cartoon view, and export a movie. Watch your simulation… Dr. Abdul Rajjak Shaikh 10 min read Updated