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How to Make 2D Protein-Ligand Interaction Diagrams (LigPlot+ & PLIP): Step by Step

13

Jul

Turn any AutoDock Vina or PyRx docking pose into a publication-ready 2D interaction diagram with free tools. Follow the LigPlot+ and PLIP workflow now.

Posted in: Drug Design ,

Tags: AutoDock Vina , Computational Biology , LigPlot+ , Molecular Docking , PLIP , Protein-Ligand Interactions ,

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AlphaFold AutoDockTools AutoDock Vina Bioinformatics CGenFF ColabFold Computational Biology Docking Drug Design Essential Dynamics gmx covar Grid Box GROMACS Homology Modelling Hydrogen Bonds Immunoinformatics LigPlot+ Methods Section Molecular Docking Molecular Dynamics Molecular Modeling Molecular Therapeutics MolProbity MSc Thesis pLDDT PLIP Principal Component Analysis Protein-Ligand Interactions Protein Structure Protein Structure Prediction Protein Structure Validation Protonation States QMEANDisCo Radius of Gyration Ramachandran Plot Reproducibility Research Paper SASA Scientific Writing Search Space Structural Bioinformatics SWISS-MODEL Trajectory Analysis Vaccine Design Virtual Screening

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STEM Skills Lab comprises of a team of scientific experts from diverse backgrounds who have more than a decade of experience in Sequence Bioinformatics, Structural Bioinformatics, Drug Discovery and Designing, Multiscale Modeling of Bio (Chemical) processes, and Modeling of High energy Materials using the state-of-the-art computational techniques.

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How to Make 2D Protein-Ligand Interaction Diagrams (LigPlot+ & PLIP): Step by Step

July 13, 2026

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July 12, 2026

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