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Secondary Structure

StemSkills Lab > Secondary Structure

How to Analyze Protein Secondary Structure from a GROMACS Trajectory (gmx dssp): A Step-by-Step Guide

16

Aug

Run gmx dssp on your GROMACS trajectory, read the .dat and .xvg outputs, and fix the “do_dssp not found” error that breaks every old tutorial.

Posted in: Molecular Modeling ,

Tags: DSSP , GROMACS , Molecular Dynamics , Secondary Structure , Trajectory Analysis ,

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STEM Skills Lab is a team of scientific experts from diverse backgrounds who have more than a decade of experience in Sequence Bioinformatics, Structural Bioinformatics, Drug Discovery and Designing, Multiscale Modeling of Bio (Chemical) processes, and Modeling of High energy Materials using advanced computational techniques.