Tag
Computational Biology
Career Guide How to Build a Bioinformatics Portfolio as a Student: Projects, Code and Proof of Skill Build a bioinformatics portfolio that a reviewer can actually run: project scope, repository layout, README contents and the claims to leave out. Ragini Mishra 12 min read Drug Design How to Check Drug-Likeness and ADMET of Your Docked Ligands (SwissADME, pkCSM and Lipinski’s Rule of Five) Learn to run SwissADME and pkCSM on your top docking hits, read the BOILED-Egg, and report Lipinski violations correctly in your thesis. Dr. Abdul Rajjak Shaikh 12 min read Updated Career Guide The Skills You Actually Need for a Computational Biology Job (and How to Prove You Have Them) Six competencies a hiring screen actually tests, the artefact that proves each one, and a self-audit you can run today. Start building… Ragini Mishra 14 min read Molecular Modeling How to Make a Point Mutation in a Protein Structure and Compare It with the Wild Type (PyMOL Mutagenesis + GROMACS) Mutate a residue in PyMOL, save the mutant correctly, then run a fair wild-type vs mutant MD comparison in GROMACS without overclaiming… Dr. Abdul Rajjak Shaikh 14 min read Updated Career Guide Bioinformatics Career Paths and Job Roles, Explained for BSc and MSc Students The seven bioinformatics job families that actually hire, the stack each one screens on, and the single project that proves you can… Ragini Mishra 13 min read Molecular Modeling How to Use gmx trjconv: Fix PBC and Extract Frames from a GROMACS Trajectory Learn the exact gmx trjconv commands to remove PBC artifacts, center your protein, strip water, and extract single frames before you run… Dr. Abdul Rajjak Shaikh 10 min read Updated Molecular Modeling How to Generate a GROMACS Topology with pdb2gmx: A Step-by-Step Beginner’s Guide Learn to run gmx pdb2gmx step by step, pick a force field and water model, and fix the "residue not found" error… Dr. Abdul Rajjak Shaikh 8 min read Updated Career Guide How to Become a Bioinformatician in India After BSc or MSc: A Practical Roadmap Four real routes into bioinformatics after a BSc or MSc in India, the exams that fund them, and the skills a hiring… Ragini Mishra 15 min read Molecular Modeling How to Perform Energy Minimization in GROMACS: A Step-by-Step Tutorial Run energy minimization in GROMACS with the exact em.mdp settings, grompp and mdrun commands, and convergence checks. Learn to read Fmax and… Dr. Abdul Rajjak Shaikh 10 min read Updated Molecular Modeling What Computer Do You Need for Molecular Docking and MD Simulations? (Laptop, GPU and Free Cloud Options) Check what hardware molecular docking and MD really need: laptop specs, why GROMACS wants a CUDA GPU, and the free Colab and… Dr. Abdul Rajjak Shaikh 12 min read Updated