Tag
Computational Biology
Molecular Modeling gmx make_ndx Tutorial: Index Groups for Protein-Ligand MD Build Protein_LIG, ligand heavy-atom and pocket index groups with gmx make_ndx, script them, and fix the grompp group errors. Follow each step. Dr. Abdul Rajjak Shaikh 15 min read Career Guide How to Find a Bioinformatics Internship: BSc and MSc Four real routes into a bioinformatics internship, what each one asks of you, and how to write the email most students never… Ragini Mishra 15 min read Career Guide Free Bioinformatics Certifications Worth Doing as a Student Compare free bioinformatics certifications, see which credentials cost nothing, which charge for the certificate, and which issue none at all. Ragini Mishra 13 min read Molecular Modeling AutoDock Vina Errors and How to Fix Them: The 10 That Stop Beginners Decode the 10 AutoDock Vina errors that stop beginners, from PDBQT parsing failures to grid box mistakes, with the exact command that… Dr. Abdul Rajjak Shaikh 14 min read Career Guide Bioinformatics vs Computational Biology vs Biotechnology: Which Should You Study? Compare bioinformatics, computational biology, and biotechnology by what you do all day, then choose your degree, electives, and first project. Ragini Mishra 12 min read Career Guide How to Apply for a Bioinformatics PhD in India and Abroad: Eligibility, Funding and Timeline Compare the Indian, US and European PhD routes, check your eligibility, find who funds you, and start the cycle early enough to… Ragini Mishra 17 min read Career Guide How to Build a Bioinformatics Portfolio as a Student: Projects, Code and Proof of Skill Build a bioinformatics portfolio that a reviewer can actually run: project scope, repository layout, README contents and the claims to leave out. Ragini Mishra 12 min read Drug Design How to Check Drug-Likeness and ADMET of Your Docked Ligands (SwissADME, pkCSM and Lipinski’s Rule of Five) Learn to run SwissADME and pkCSM on your top docking hits, read the BOILED-Egg, and report Lipinski violations correctly in your thesis. Dr. Abdul Rajjak Shaikh 12 min read Updated Career Guide The Skills You Actually Need for a Computational Biology Job (and How to Prove You Have Them) Six competencies a hiring screen actually tests, the artefact that proves each one, and a self-audit you can run today. Start building… Ragini Mishra 14 min read Molecular Modeling How to Make a Point Mutation in a Protein Structure and Compare It with the Wild Type (PyMOL Mutagenesis + GROMACS) Mutate a residue in PyMOL, save the mutant correctly, then run a fair wild-type vs mutant MD comparison in GROMACS without overclaiming… Dr. Abdul Rajjak Shaikh 14 min read Updated